1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acatttgtttagtttaaccttactatgaattaacttagccattatgctacaatatcatttgttgtaatcaggaaattgattatcttataatgttctgtagGAACTAAAACGAAGGGAAGATGCTATAGCACGAG
species | Glycine max |
transcript | GLYMA12G11820.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG GAACTAAAACGAAGGGAAGATGCTATAGCACGAGEST: gi|213599371|gb|DB970347.1|DB970347
genomic: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGgtgattcatt ... tgttctgtagGAACTAAAACGAAGGGAAGATGCTATAGCACGAG
EST: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG GAACTAAAACGAAGGGAAGATGCTATAGCACGAGEST: gi|298174331|gb|HO017667.1|HO017667
genomic: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGgtgattcatt ... tgttctgtagGAACTAAAACGAAGGGAAGATGCTATAGCACGAG
EST: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG GAACTAAAACGAAGGGAAGATGCTATAGCACGAGEST: gi|15813443|gb|BI785718.1|BI785718
genomic: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGgtgattcatt ... tgttctgtagGAACTAAAACGAAGGGAAGATGCTATAGCACGAG
EST: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG GAACTAAAACGAAGGGAAGATGCTATAGCACGAGEST: gi|13787288|gb|BG649880.1|BG649880
genomic: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGgtgattcatt ... tgttctgtagGAACTAAAACGAAGGGAAGATGCTATAGCACGAG
EST: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAG GAACTAAAACGAAGGGAAGATGCTATAGCACGAG
genomic: AGGAGAAGGAACTTCAAGCTAAAGAGGCTGAATTGAAAAGAAGGGAACAGgtgattcatt ... tgttctgtagGAACTAAAACGAAGGGAAGATGCTATAGCACGAG
gctacaatatcatttgttgtaatcaggaaattgattatcttataatgttctgtagGAACTAAAACGAAGGGAAGATGCTATAGCACGAG
aattgat putative branch site (score: 4)
aaattgattatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatttgtttagtttaaccttactatgaattaacttagccattatgctacaatatcatttgttgtaatcaggaaattgattatcttataatgttctgtagGAACTAAAACGAAGGGAAGATGCTATAGCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - ctatgaa
- - - - - - - - - - - - - - - - - - agccatt
- - - - - - - - - - - - - - - - - - - - - - tgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgta