1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcatttgaatgttcaagtggatacatgccatcttctttcatcttctttgtttcctctttatttatggtgtatattattgttcttttttggattaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCTGAGAAGGCGATCTTCATTTTTGTTAAG
species | Glycine max |
transcript | GLYMA12G10510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGA-TTGAAAAA GTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGEST: gi|209704750|gb|BW676067.1|BW676067
genomic: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCG
EST: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAA GTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGEST: gi|209696942|gb|BW660507.1|BW660507
genomic: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCG
EST: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAA GTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGEST: gi|18040023|gb|BM308317.1|BM308317
genomic: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCG
EST: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAA GTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGEST: gi|23730734|gb|BU763465.1|BU763465
genomic: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCG
EST: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAA GTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGEST: gi|254337996|gb|GR845459.1|GR845459
genomic: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCG
EST: GAAGAGTGATGTTCCTGAAATTGACAAGAAAAA GTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGEST: gi|58017380|gb|CX704122.1|CX704122
genomic: GAAGAGTGATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCG
EST: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAA GTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGEST: gi|151405049|gb|EV274863.1|EV274863
genomic: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCG
EST: ATGTTCCTGAAATTGACAAGAAAAA GTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGEST: gi|213601006|gb|DB983681.1|DB983681
genomic: ATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCG
EST: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAA GTATCTT-TAACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGC
genomic: ATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGAAATTGACAAGAAAAAgtaggtttct ... attaatgtagGTATCTTGT-ACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGC
tttgtttcctctttatttatggtgtatattattgttcttttttggattaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCTGAGAAGGCGATCTTCATTTTTGTTAAG
gattaat putative branch site (score: 3)
tatattattgttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttgaatgttcaagtggatacatgccatcttctttcatcttctttgtttcctctttatttatggtgtatattattgttcttttttggattaatgtagGTATCTTGTACCCGCTGATTTGACTGTTGGTCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCTGAGAAGGCGATCTTCATTTTTGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - -tgaatgt
- - - - - - -caagtgg
- - - - - - - - - - - -catgcca