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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaaagataaaaaataaacaatcaaacatgagaatagactaaagatgattccattcagcaaaaacaaatagtaagtcttttcaactgtctggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC

Basic information

species Glycine max
transcript GLYMA12G10210.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691759|gb|AW759880.1|AW759880
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|298183030|gb|HO028293.1|HO028293
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|31456519|gb|CD398547.1|CD398547
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|213618025|gb|DB963658.1|DB963658
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|23064258|gb|BU579031.1|BU579031
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|298182663|gb|HO031398.1|HO031398
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|192316108|gb|FK007169.1|FK007169
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|192305211|gb|FG993963.1|FG993963
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|13788666|gb|BG651257.1|BG651257
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|27425967|gb|CA937487.1|CA937487
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|209725576|gb|BW677878.1|BW677878
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|209725577|gb|BW677879.1|BW677879
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|298193194|gb|HO033628.1|HO033628
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|192299092|gb|FG990406.1|FG990406
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|31474066|gb|CD416094.1|CD416094
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|209702927|gb|BW667449.1|BW667449
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
EST: gi|31312023|gb|CD397226.1|CD397226
EST:     CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAA                         GGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA
genomic: CTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAgtaagtattc ... ggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattccattcagcaaaaacaaatagtaagtcttttcaactgtctggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC
              aaaaacaaatagtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caaaagataaaaaataaacaatcaaacatgagaatagactaaagatgattccattcagcaaaaacaaatagtaagtcttttcaactgtctggttttgcagGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
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