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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgctttatatatatatatatatatatcatacttgttcaggtaaatgaaaatctcatgcacatgtctcatttagtttaatttatttattgtgcagGCCAATTTTGCAAAATGGGAGCCAGGTCATGGCAAGTTTAGATTTCGTCATCCTTGGGACCTATACCTCAAAGTTGGTGCTCTTTCTCGCCAATGTGCAT

Basic information

species Glycine max
transcript GLYMA12G09980.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09980.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G08440.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtgtgctttatatatatatatatatatatca---tacttgttcaggtaaa------tgaaaatctcatgcacatg-tctcat-ttagtttaatttatttatt---gtgcagGCCAATTTTGCAAAATGGGAGCCAGGTCATGGCAAGTTTAGATTTCGTCATCCTTGGGACCTATACCTCAAAGTTGGTGCTCTTTCTCGCCAATGTGCAT
||| ||   || | ||  ||| |   ||  | ||     |||| |  |  || |      |  ||||  | || ||  | |||  | ||  | |||||| || |||   ||  |||| ||||||||||||||||| ||  |||||||| | ||||||||||| ||||| |||   | ||| ||    || |||||  |    || |||| ||| |
gtgggtactctctctagctatttccctacttctccattcacttttataattataccctttttgaaataacttggactggatcttgtattgatataatttgttcatttgtgtttagGCTAATTTTGCAAAATGGGAACCGCGTCATGGCCAATTTAGATTTCGGCATCCATGGAGACAATATCTTGCCGTGGGTGCATTACTCCGGCAATCTGCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatgaaaatctcatgcacatgtctcatttagtttaatttatttattgtgcagGCCAATTTTGCAAAATGGGAGCCAGGTCATGGCAAGTTTAGATTTCGTCATCCTTGGGACCTATACCTCAAAGTTGGTGCTCTTTCTCGCCAATGTGCAT
                                 gtttaat  putative branch site (score: 4)
                                       tttattt  CT-rich tract
                     atgtctcatttagttt  TA-rich tract