1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcttttgctttctctttttttcttcattcccttttgtgccttgcaatctataatgtataactctatgctacctttttccttcttactagGAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGTACTTGCTCCTCATCAATGTCCCAACTTCTAGTCCTGCAAAATTTCCAAA
species | Glycine max |
transcript | GLYMA12G09730.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGAATTCCAAACTTATG GAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGTEST: gi|22931458|gb|BU548597.1|BU548597
genomic: ATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGAATTCCAAACTTATGgtatgctttt ... ttcttactagGAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGT
EST: ATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGAATTCCAAACTTATG GAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGTEST: gi|31307026|gb|CD392229.1|CD392229
genomic: ATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGAATTCCAAACTTATGgtatgctttt ... ttcttactagGAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGT
EST: ATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGAATTCCAAACTTATG GAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGT
genomic: ATTGGATTCAAGGGAAGGACTGAAGAGTACTTTTGAATTCCAAACTTATGgtatgctttt ... ttcttactagGAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGT
tgtgccttgcaatctataatgtataactctatgctacctttttccttcttactagGAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGTACTTGCTCCTCATCAATGTCCCAACTTCTAGTCCTGCAAAATTTCCAAA
gtataac putative branch site (score: 3)
ctctatgctacctttt CT-rich tract
aatctataatgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttttgctttctctttttttcttcattcccttttgtgccttgcaatctataatgtataactctatgctacctttttccttcttactagGAGAAATCTGTGTAATATCGCCTTCATAATGTTGTATATTATTATTGTTGTACTTGCTCCTCATCAATGTCCCAACTTCTAGTCCTGCAAAATTTCCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC