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gtacaatacctcacttgacctcgttattgttctttgttagctcacatttagtgacatcaatgatttcttacatcaaggcatgtaggttttgatcaattacagttgttcagaggttgtgtaagctgcttattctgtcacttttattcttaattgtagCTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGTGGATATTGCTTGGTTATTTTGTCCGTACAG
species | Glycine max |
transcript | GLYMA12G09720.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCT CTCAAGAGGGAATTACTGCTTCTATCTGTEST: gi|15288064|gb|BI471955.1|BI471955
genomic: AGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCTgtacaatacc ... ttaattgtagCTCAAGAGGGAATTACTGCTTCTATCTGT
EST: AGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCT CTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGTEST: gi|31476111|gb|CD418139.1|CD418139
genomic: AGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCTgtacaatacc ... ttaattgtagCTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGT
EST: AGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCT CTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGTEST: gi|192296222|gb|FG989763.1|FG989763
genomic: AGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCTgtacaatacc ... ttaattgtagCTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGT
EST: AGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCT CTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGT
genomic: AGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCTgtacaatacc ... ttaattgtagCTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGT
gttgttcagaggttgtgtaagctgcttattctgtcacttttattcttaattgtagCTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGTGGATATTGCTTGGTTATTTTGTCCGTACAG
tcttaat putative branch site (score: 3)
tcacttttattctt CT-rich tract
ttttattcttaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatacctcacttgacctcgttattgttctttgttagctcacatttagtgacatcaatgatttcttacatcaaggcatgtaggttttgatcaattacagttgttcagaggttgtgtaagctgcttattctgtcacttttattcttaattgtagCTCAAGAGGGAATTACTGCTTCTATCTGTGGGTATTGGATTGGCTTGTAGTGGATATTGCTTGGTTATTTTGTCCGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA