Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctctgaaattttgatggctgtgaatctgtgattgtttatgtgctattcaataacatcaactatggatgcagAACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATACGATTGAGTTATCATCATGGGAATCATTACAACTCCCTTGTTGATCCACG

Basic information

species Glycine max
transcript GLYMA12G09700.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09700.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G164663_T01 (Zea mays), 3'ss of exon 4
-----------gtgagcctctga---aattttgatggctgtgaatctgtgattgtttatgtgctattcaataacat--caactatggatgcagAACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATACGATTGAGTTATCATCATGGGAATCATTACAACTCCCTTGTTGATCCACG
              ||| | | |   |   ||| ||    | | |   || | | |  | | |   ||| ||||||     || |   |||||| || || ||||| ||||| |||||||| ||||| ||| | || |||||  |||| ||||| |||||||| ||||||||||| ||  | |||||||| ||
gtaaaatttgctaaagcatttaacttatccttgctgctcattatttaatgctagctagtat-cagctcattaacatgtttgctgttattgcagAGCCCATTAATATTTTTCAAGGAAGCTATAACACAGACGTTCCTCCAATTAGATTAAGTTACCATCATGGTAATCATTACAATTCAGTGGTTGATCCCCG

upper sequence: GLYMA12G09700.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0080g00850.t01 (Vitis vinifera), 3'ss of exon 4
---------------------gtgagcctctgaaattttgatggctgtgaatctgtgattgtttatgtgctattcaataacatcaactatg---gatgcagAACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATACGATTGAGTTATCATCATGGGAATCATTACAACTCCCTTGTTGATCCACG
                      |||   |    |  ||   |   ||    ||  |       |   | || | || |||||  || | |      ||||||||||||||| || ||||||||||||||  | |||||||  || || || ||||| || |||||||||||||||||||||||||| ||||||||||| ||
gtgctgctctattagagatgactgatgattgtgacattcattaagtgaacttccttttcaacattcttactttccactaacacaaagtcttcctattgcagAACCTATCAACATTTTTCATGGAAGCTATGATACTGACACACCTCCCATTCGATTAAGCTATCATCATGGGAATCATTACAACTCACTTGTTGATCCCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254325739|gb|GR838620.1|GR838620
EST:     CATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAG                         AACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATAC
genomic: CATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAGgtgagcctct ... atggatgcagAACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATAC
EST: gi|193690338|gb|FK629245.1|FK629245
EST:     CATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAG                         AACCTATCAATATCTTTCAT
genomic: CATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAGgtgagcctct ... atggatgcagAACCTATCAATATCTTTCAT
EST: gi|7284768|gb|AW597318.1|AW597318
EST:     CATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAG                         AACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATAC
genomic: CATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAGgtgagcctct ... atggatgcagAACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATAC
EST: gi|9564538|gb|BE474047.1|BE474047
EST:     CATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAG                         AACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATAC
genomic: CATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAGgtgagcctct ... atggatgcagAACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtgaatctgtgattgtttatgtgctattcaataacatcaactatggatgcagAACCTATCAATATCTTTCATGGAAGCTACAACACTGACATGCCACCAATACGATTGAGTTATCATCATGGGAATCATTACAACTCCCTTGTTGATCCACG
                               caataac  putative branch site (score: 2)
                           tattcaataa  TA-rich tract