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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaacaatctcctccattatgtctaacatctaatgaaccacaaagctttgtttctgaacaacaaactggtttctcagCCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAA

Basic information

species Glycine max
transcript GLYMA12G09490.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404835|gb|EV274649.1|EV274649
EST:     ATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAA                         CCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAA
genomic: ATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAAgtaagagaac ... ggtttctcagCCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacatctaatgaaccacaaagctttgtttctgaacaacaaactggtttctcagCCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAA
                                               tttctc  CT-rich tract
     atctaat  TA-rich tract