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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcaaatcttcattttcaaaagtctaatattctttcacaattggctttattaagtactaacaaagaaatgaaatatttttggtcgattcacaaacatagGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAACCAAAAATGAGCTAAGATTTGAAACAGAATCTCCAATAA

Basic information

species Glycine max
transcript GLYMA12G09430.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09430.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0080g00360.t01 (Vitis vinifera), 3'ss of exon 4
---attcaaatcttcattttcaaaagtctaatattctttcacaattggctttattaagtactaacaaagaaatgaaatatttttggtcgattcacaaacatagGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAACCAAAAATGAGCTAAGATTTGAAACAGAATCTCCAATAA
       | ||   |   || |||||  |||   | ||    |  ||  |||| ||   | |   |||    ||      ||||| |    |    |||  ||||| |||||||||||||||| || |||||||| |||||||||| |||||||||||||||||  | |  ||||      || ||| | |||||||| || |
cttggggacataccccacttgaaaag--taaggctattcttaaggtgtttttaatacccatttg-aaaattttggtgggcttttgtttccgttttcaactcagGGAAGTTCAAAGTCAGGAGGAGAGAGCACTGACTCAGGATCAGCAGTGAACACTCTTTCAAGTAGAGCTGAGGCCCAGTTGGAACCGGAATCTCCTATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttattaagtactaacaaagaaatgaaatatttttggtcgattcacaaacatagGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGATCAGGAGTGAACACTCTTTCAACCAAAAATGAGCTAAGATTTGAAACAGAATCTCCAATAA
          tactaac  putative branch site (score: 0)
             taacaaagaaatgaaa  TA-rich tract