1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaattctgtaacaagtactatttattgagaaatttatctaaacagaaccatggtaaaacctctgaggtaattgtgatgatggtatgttcccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATGGTGGCCTTTGGCAACTGGGAATTTGACCCTCTGAAGCTAAGTAATCCAT
species | Glycine max |
transcript | GLYMA12G09410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGATATAGATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAG AACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATGEST: gi|26269479|gb|CA820542.1|CA820542
genomic: GAGATATAGATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAGgcaagttaca ... ccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
EST: GATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAG AACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATGEST: gi|19345810|gb|BM890690.1|BM890690
genomic: GATATTTTAGAGACAATTCCTGGCTTCCCAATGCTTACCAAGgcaagttaca ... ccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
EST: AGATATAGATATTTTAGAGACAATTCCTGCGCTTCCCAATGCTTACCAAG AACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
genomic: AGATATAGATATTTTAGAGACAATTCCTG-GCTTCCCAATGCTTACCAAGgcaagttaca ... ccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATG
gaaccatggtaaaacctctgaggtaattgtgatgatggtatgttcccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATGGTGGCCTTTGGCAACTGGGAATTTGACCCTCTGAAGCTAAGTAATCCAT
ttcccactt CT-rich tract
taattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaattctgtaacaagtactatttattgagaaatttatctaaacagaaccatggtaaaacctctgaggtaattgtgatgatggtatgttcccacttacagAACAAATTAAGGGAACAAGTTGTTTTTGACACTCTAAGGGGTGACTGGATGGTGGCCTTTGGCAACTGGGAATTTGACCCTCTGAAGCTAAGTAATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC