1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttcttgacttcttgtattgtttgttctttttccaacattaattcataaatgattttccatttttgagttgaaaattatgctcagtatttctcaatcttcaattgcattcttggttttattgtgcattatggtaatttttaacatcgtaagaggtgtgatgctgtgattcagGTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCTGTTCACTTTTGGGTTCGAGAGATGCCAGACACCACAGAAATTATGAGA
species | Glycine max |
transcript | GLYMA12G09340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTT GTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCEST: gi|10843174|gb|BF066487.1|BF066487
genomic: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTgtaagttctt ... tgtgattcagGTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
EST: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTT GTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCEST: gi|17021871|gb|BM092905.1|BM092905
genomic: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTgtaagttctt ... tgtgattcagGTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
EST: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTT GTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
genomic: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTgtaagttctt ... tgtgattcagGTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
tattgtgcattatggtaatttttaacatcgtaagaggtgtgatgctgtgattcagGTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCTGTTCACTTTTGGGTTCGAGAGATGCCAGACACCACAGAAATTATGAGA
ttttaac putative branch site (score: 2)
attatggtaattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttgacttcttgtattgtttgttctttttccaacattaattcataaatgattttccatttttgagttgaaaattatgctcagtatttctcaatcttcaattgcattcttggttttattgtgcattatggtaatttttaacatcgtaagaggtgtgatgctgtgattcagGTGGACATTGCCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCTGTTCACTTTTGGGTTCGAGAGATGCCAGACACCACAGAAATTATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG