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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaagacaatagttctgtttactttttttatttttattgagtcaatgggatgccgttttggttaatcaacttgtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG

Basic information

species Glycine max
transcript GLYMA12G09300.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338581|gb|CO982447.1|CO982447
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
EST: gi|57575390|gb|CX548365.1|CX548365
EST:     TACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
genomic: TACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
EST: gi|207769070|gb|GD741986.1|GD741986
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTA
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTA
EST: gi|193656125|gb|FK603591.1|FK603591
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
EST: gi|208307913|gb|GE105435.1|GE105435
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGACGTAATAATACATACCCCTACCT
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAG-CGTA-TA-TACATACCCCTACCT
EST: gi|193360519|gb|FK328117.1|FK328117
EST:     GAAAGTTCTTGTTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
genomic: GAAAGTTCTTG-TTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
EST: gi|193598592|gb|FK554632.1|FK554632
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCC
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCC
EST: gi|193354272|gb|FK319844.1|FK319844
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTACGATAAGCGTATA
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTT-CGATAAGCGTATA
EST: gi|193493757|gb|FK461403.1|FK461403
EST:     TTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCCGATAAGCGTATATACATACCCC
genomic: TTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTC-GATAAGCGTATATACATACCCC
EST: gi|208305898|gb|GE109577.1|GE109577
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCT
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCT
EST: gi|58014504|gb|CX701246.1|CX701246
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
EST: gi|58023445|gb|CX710186.1|CX710186
EST:     TACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
genomic: TACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
EST: gi|208027498|gb|GD826204.1|GD826204
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTA
EST: gi|193367132|gb|FK329844.1|FK329844
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATA
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATA
EST: gi|19346337|gb|BM891217.1|BM891217
EST:     AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAG                         GCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGAT
genomic: AGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGgtaagaagac ... gtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttttattgagtcaatgggatgccgttttggttaatcaacttgtaattgcagGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAG
                                ggttaat  putative branch site (score: 4)
     tttattga  TA-rich tract