1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagattgaaaatataaatttaaacatgatgtaaaaaattgcattaaatgctcccatagctgctcatataaaacattgatgatcatatagttcaagttatttaatatcatgaatataaccaataatttaattataaatggtaattctggttccatgcttacttatccctcttctcttatccacagCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGATGCAAGAAGATATATCAGACAACTTCCTCAATATCCTCGCCAACCTTTAG
species | Glycine max |
transcript | GLYMA12G07770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAG CTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGATEST: gi|19938175|gb|BQ081596.1|BQ081596
genomic: CTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGgtgagattga ... ttatccacagCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGAT
EST: CTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAG CTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGATEST: gi|16105043|gb|BI892783.1|BI892783
genomic: CTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGgtgagattga ... ttatccacagCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGAT
EST: CTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAG CTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGATEST: gi|7924748|gb|AW830774.1|AW830774
genomic: CTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGgtgagattga ... ttatccacagCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGAT
EST: CTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAG CTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGAT
genomic: CTCTGTTTCCGGGCAAAGACCATGTGCATCAGATGCGCCTATTGACAGAGgtgagattga ... ttatccacagCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGAT
ttataaatggtaattctggttccatgcttacttatccctcttctcttatccacagCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGATGCAAGAAGATATATCAGACAACTTCCTCAATATCCTCGCCAACCTTTAG
tgcttac putative branch site (score: 2)
ttccatgcttacttat CT-rich tract
ttacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattgaaaatataaatttaaacatgatgtaaaaaattgcattaaatgctcccatagctgctcatataaaacattgatgatcatatagttcaagttatttaatatcatgaatataaccaataatttaattataaatggtaattctggttccatgcttacttatccctcttctcttatccacagCTTCTTGGCACCCCAACTGAGGCTGACCTTGGGTTAGTGAAAAATGAAGATGCAAGAAGATATATCAGACAACTTCCTCAATATCCTCGCCAACCTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG