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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgggtccatgttgtcagtgtttacttgtgtggttgacagttctagttcatggtagatttgatcactgatggatttacatttgcagGATGACAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATAATTCCAGGCACTGATAGGCGATTTAAG

Basic information

species Glycine max
transcript GLYMA12G07720.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253374|gb|BE821140.1|BE821140
EST:     CTGCTGCAGCAAAGATCTATGGCTTGAATATACTTGATCAAGACATTCAG                         GATGACAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATA
genomic: CTGCTGCAGCAAAGATCTATGGCTTGAATATACTTGATCAAGACATTCAGgtctgggtcc ... acatttgcagGATGACAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATA
EST: gi|7147398|gb|AW509320.1|AW509320
EST:     CTGCTGCAGCAAAGATCTATGGCTTGA-TATACTTGATCAAGACATTCAG                         GATGACAGTGATAATGTCACCCGATTATTAATGTTAGCACGAGAACCTATA
genomic: CTGCTGCAGCAAAGATCTATGGCTTGAATATACTTGATCAAGACATTCAGgtctgggtcc ... acatttgcagGATGACAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgacagttctagttcatggtagatttgatcactgatggatttacatttgcagGATGACAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATAATTCCAGGCACTGATAGGCGATTTAAG
                                cactgat  putative branch site (score: 3)
                                         atttacattt  TA-rich tract