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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtaatattcatggtacatatcctgtctcaataaaaacaattttcctgagcctctttccttacatgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG

Basic information

species Glycine max
transcript GLYMA12G07340.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 3'ss of exon 4
------gtgagtgtaatattca-tggtacata----tcctgtctcaat-aaaaacaattttcctgagcctcttt-ccttacatgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG
      ||||    ||  |||| || |||||     ||| ||| |  |  | ||||  ||   | ||  |  ||   ||  ||| || ||||| ||| ||||||||| |||| ||||||||||||||||| ||||||
gtaagtgtgaaatcaaatttcaatgttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacagGTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208094328|gb|GD891589.1|GD891589
EST:     ATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG                         GCTCTTTATCGAGGCTCTGTTGATGACAAGCATTATGCAATTAAG
genomic: ATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtaa ... tgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctgtctcaataaaaacaattttcctgagcctctttccttacatgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG
                                     tccttac  putative branch site (score: 2)
                               cctctttccttacat  CT-rich tract
        tcaataaaaacaattt  TA-rich tract