Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttggtctttgttgtctgttacttttgtttgaaacgttgtttaataagctatactcatattcctgcatggatgaagGAACTTCGTGGAATTATAAAAGGCTCTGGCTATCTTTGTGGGTGCCAATCATGCAACTATACAAAG

Basic information

species Glycine max
transcript GLYMA12G07080.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17153253|gb|BM143186.1|BM143186
EST:     CTGGTATTCTTGATGGAGTTCCTGTAAAGTATATCTCAGTGTCACGAGAG                         GAACTTCGTGGAATTATAAAAGGCTCTGGCTATCTTTGTGGGTGCCAATCA
genomic: CTGGTATTCTTGATGGAGTTCCTGTAAAGTATATCTCAGTGTCACGAGAGgtaaattttg ... atggatgaagGAACTTCGTGGAATTATAAAAGGCTCTGGCTATCTTTGTGGGTGCCAATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgtttgaaacgttgtttaataagctatactcatattcctgcatggatgaagGAACTTCGTGGAATTATAAAAGGCTCTGGCTATCTTTGTGGGTGCCAATCATGCAACTATACAAAG
                 gtttaat  putative branch site (score: 4)
                  tttaataagctata  TA-rich tract