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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttaatttttttagttcccatttttatttaatatgaatttacttttatatatcactgtctttaaaaaatatgcagatttactggctaaaaacttagcttctatttcacccaacattattatatgtggaccttgttccttatcatctcacagATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGACTAAGTCTGCCAAACAATTCATAAAACAGTTCATGGTTGCAACATATTC

Basic information

species Glycine max
transcript GLYMA12G07020.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14516430|gb|BI095102.1|BI095102
EST:     TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAG                         ATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAAGCGAGCGA
genomic: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatt ... catctcacagATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGA
EST: gi|192296082|gb|FG989448.1|FG989448
EST:     TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAG                         ATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGA
genomic: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatt ... catctcacagATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGA
EST: gi|192307333|gb|FK000717.1|FK000717
EST:     TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAG                         ATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGA
genomic: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatt ... catctcacagATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGA
EST: gi|192310264|gb|FK000716.1|FK000716
EST:     TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAG                         ATACTGGATGGAAGACG
genomic: TCGTTTCTGAAACTACAGCTGCTGCAGCTCGCAAAGAAATGAATGGCCAGgtttttaatt ... catctcacagATACTGGATGGAAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctatttcacccaacattattatatgtggaccttgttccttatcatctcacagATACTGGATGGAAGACGCATTCGGGTGAGTTATGCACACAAAGGCGAGCGACTAAGTCTGCCAAACAATTCATAAAACAGTTCATGGTTGCAACATATTC
                                ccttgttccttatc  CT-rich tract
 aacattattatatgt  TA-rich tract