Sequence
atgc intronic sequence ATGC exonic sequence...aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
Basic information
species | Glycine max |
transcript | GLYMA12G06980.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 4
aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaattta----attaaaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
| | | | | | | | | || | |||| | || | || | | | | || | | |||||||| | |||| || | | | |||||||||| ||| || | | |||||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||||| |||
--cttaagac-actaaactttttttgcgatcagttctatcgtatcttcaaaagtatattattgtgagatattaaaattttgaccttttttttattcattt-cagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G157772_T02 (Zea mays), 3'ss of exon 1
aacatgacatgaatg-atgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaatta--aaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
| ||| | |||| | | | || | | | | || || | | | | | || | | | || | || |||| ||| | |||||||| |||| | | | || ||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||||| |||
atcatatagtcaatgtgtttcctgagttgtctgttgaatgaattttctttcttctgctcttaattgaccatttactgtaaattctttctatttgttt---tagATGTCATCGAGCCGCTTCTTGTAGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 3
-aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaac-agATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
| | ||| || | | ||| || | ||||| | | | | | | | | ||| | | || || || | || ||||||||| |||| | | | || ||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||||| |||
cagtctaaca-gatcactcttctcagttgtttc-tttttaaataatatgtgcctcctcatgagttaggcacttattctgtaaattctttctatttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G300412_T01 (Zea mays), 3'ss of exon 10
aacatgacatgaatgatgctatcatgtgcatagtt----tttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
|| | | | || | | | | | | | |||||| | || | | | | || | || |||| ||| | ||||||||| |||| | | | || ||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| ||||| |||| |||
-ttttggtacaagtattgttgatttctttggaatcagaaccaattaggttttagttcatgagttaggcactgattctgtaaattctttctatttgttt---tagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATATTCTACAAGCACAACTCTGTTAAG
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G382038_T01 (Zea mays), 3'ss of exon 5
aacatgacatgaatgatgctatcatgtgcatagtt----tttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
|| | | | || | | | | | | | |||||| | || | | | | || | || |||| ||| | ||||||||| |||| | | | || ||||| ||||||||||| ||||| ||||| ||||| ||||| |||||||| ||||| |||| |||
-ttttggtacaagtattgttgatttctttggaatcagaaccaattaggttttagttcatgagttaggcactgattctgtaaattctttctgtttgttt---tagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACTCTGTTAAG
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: AT2G28760.1 (Arabidopsis thaliana), 3'ss of exon 3
aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttc--cctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
| || || | | || || || || | || | ||| || || ||||| | || | ||||||| || || | | || | ||||||||||||||||| ||| | ||||| || ||||||||||||||||||||||||||||| || |||
---------------gta-tagtatcttcttaattaatcaaacttacttaatactcattaaccaaaacaatgcattaatactcattcttgtgattttttcagATGTGACTGAACCTCTTTTCGTCGAGGTTGATCAAATCTACCATTTAGCATGTCCCGCTTCTCCAATTTTCTACAAATACAACCCCGTTAAG
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 3'ss of exon 3
--aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttatttt--ccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
| | | || | | | ||| | || || ||| | | | | | | | || || ||| | |||| | | ||||||||| || |||| |||||||| |||||||||| || || |||||||| || || || ||||| || |||||||||||||||||||| |||
gtatggtctcgagactctcagtttgttgttaagcgtcttcttgttcatgtcaacaagatcca---tcatcgtgatctctat-ttggaatttgggctttaaacagATGTTACCGAGCCTTTGTTGATCGAGGTTGATCGGATTTACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAATACAACCCTGTTAAG
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 3'ss of exon 4
aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttcc-ctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG--------
||| | | || || | || | | | || | | | ||| ||| | | |||| ||| |||| | |||||||||||| |||| | | ||||| ||||||||||| || || ||||||||||| || |||||||| || |||||||| ||||||||||| |||
-gtatggttttga-aattctctggcttgt-tgctgctattgagaatggaatattcctgtcttttgttctatccatttatattttggttttgggtttaacagATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAA
upper sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 4
-aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttt---tattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
| | | || | ||| | || || || | ||| || | | | ||| | || | | | || | || | | ||||| || ||||||||||| |||| ||||||||||||||||||| | || || || |||||||| || |||||||| ||||| || ||| |||| |||||||||
tcagttaagatca-caatga-accacttgt-taatcttttaatgataattcaca-gtttcatttctaatgattagcttttattccatattttttctcttcacagATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208312127|gb|GE107347.1|GE107347EST: C-ACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
genomic: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataatttt ... ccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
atttaat putative branch site (score: 4)
tacttttattttccct putative PPT
ttgtaatttaattaaa TA-rich tract