1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
species | Glycine max |
transcript | GLYMA12G06980.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: C-ACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATEST: gi|209703509|gb|BW656547.1|BW656547
genomic: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataatttt ... ccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
EST: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATEST: gi|192298392|gb|FG989143.1|FG989143
genomic: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataatttt ... ccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
EST: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATEST: gi|192330026|gb|FK020842.1|FK020842
genomic: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataatttt ... ccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
EST: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
genomic: CAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGgtataatttt ... ccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCAT
tttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
atttaat putative branch site (score: 4)
tacttttattttccct putative PPT
ttgtaatttaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaacagATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG
-acatgac
- - - - - - -tgatgct
- - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat