Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaatggtattgcattttgtccaccactagcaaatttatatacttttcacttgttataagttttctaagtcatgatatattaaaatatgttatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA

Basic information

species Glycine max
transcript GLYMA12G06960.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 2
gaaatggt-attgcattttgtccaccactagcaaat-ttatatacttttcacttgttataagttttctaagtcatgatatattaaaatatgttatc---ttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA
   ||| | ||    | | |         || |    || | |||| |  | |  | |||   || || | || ||  || ||||    |||| ||   || ||||| ||||| |||||  |||| ||||| |||||||||||  | || ||||||||||| || |||||| ||||||| || 
--tatgtttatcttctctagctttttgtaagtagccattttttactgtctaatcatcata---ttcctgattcttgtaattttaatgagtgttttccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT

upper sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 4
--gaaatggtattgcattttgtccaccactagcaaatttatatacttttcacttgttataagttttctaagtcatgatatattaaaat-atgttatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA
     || |  ||  |  |  ||      |  ||| | | |   || |  |      |||  ||     | | |  |  ||||  | | ||||||| |  ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||
atattatagagtttaaggtcatcgtgtgttgacaattattttccctatctagcgaccata--ttaatgcacttacaac-tattgcattgatgttatgtcacagGTTGAAAGTATAGTTTTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCACCTGCAAACATTGAAGCTGCA

upper sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0019g00910.t01 (Vitis vinifera), 3'ss of exon 4
-gaaatggtattgcattttgtccaccactagcaaatttatatacttttcacttgttataagttttctaagtcatgatatattaaaatatg---ttatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA
         |||   || |||  |  | | |    |||   | ||  || |||  |   | |||| |   |  | ||  |   || ||||    ||  || ||||| || || ||||| || ||||| ||||| ||||| || || |||||||| |||||||| ||||||||||||||||| 
ctttgctcaattaagttgtgtg-attatttgtggtttt---tcctcctctctttctcgtaattttatgtctatttatgaaactaactatggttctaattttcagGTTGAAAGCATAGTCTTAAGTATAATATCAATGCTGTCAAGTCCTAATGACGAATCTCCCGCAAATGTTGAAGCTGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193718133|gb|FK653403.1|FK653403
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193726878|gb|FK662794.1|FK662794
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|208242324|gb|GE037850.1|GE037850
EST:     ATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193440547|gb|FK409508.1|FK409508
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193467346|gb|FK434391.1|FK434391
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|298170658|gb|HO019282.1|HO019282
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|27425977|gb|CA937497.1|CA937497
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|209702411|gb|BW656387.1|BW656387
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193560164|gb|FK518883.1|FK518883
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193487584|gb|FK449709.1|FK449709
EST:     CCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: CCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|17022209|gb|BM093243.1|BM093243
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|15337487|gb|BI498143.1|BI498143
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193449046|gb|FK414275.1|FK414275
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|27426740|gb|CA938260.1|CA938260
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193692274|gb|FK631103.1|FK631103
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193443218|gb|FK405240.1|FK405240
EST:     ATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTA
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTA
EST: gi|207801092|gb|GD774137.1|GD774137
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGA
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGA
EST: gi|193314440|gb|FK279275.1|FK279275
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193345718|gb|FK311239.1|FK311239
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|151400067|gb|EV269881.1|EV269881
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|13252164|gb|BG363067.1|BG363067
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|208075089|gb|GD876370.1|GD876370
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193343999|gb|FK312375.1|FK312375
EST:     AGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: AGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193557717|gb|FK512030.1|FK512030
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|298173257|gb|HO020241.1|HO020241
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|151397271|gb|EV267144.1|EV267144
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193692948|gb|FK628501.1|FK628501
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGTTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAATATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|207786123|gb|GD758320.1|GD758320
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|33387309|gb|CA850516.1|CA850516
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193623589|gb|FK575051.1|FK575051
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|209705175|gb|BW673715.1|BW673715
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193540732|gb|FK494382.1|FK494382
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|208292610|gb|GE092514.1|GE092514
EST:     ATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|14259958|gb|BG882866.1|BG882866
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|19268884|gb|BM885140.1|BM885140
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193374937|gb|FK338993.1|FK338993
EST:     ATCCAAATGGTTATGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193486453|gb|FK449642.1|FK449642
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|208337702|gb|GE136484.1|GE136484
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|193717462|gb|FK652860.1|FK652860
EST:     TCCAAATGGTTACGAGCTTGCGAGTTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: TCCAAATGGTTACGAGCTTGCGAG-TGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|11688939|gb|BF596677.1|BF596677
EST:     ATCCAAATGGTTACAAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|20498658|gb|BQ273588.1|BQ273588
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|298182923|gb|HO028136.1|HO028136
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|208118238|gb|GD917333.1|GD917333
EST:     ATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|20498754|gb|BQ273684.1|BQ273684
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|209704114|gb|BW673714.1|BW673714
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|208327591|gb|GE121133.1|GE121133
EST:     ATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
EST: gi|209702412|gb|BW656388.1|BW656388
EST:     ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACG                         GTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT
genomic: ATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGgtatgtgaac ... tatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacttgttataagttttctaagtcatgatatattaaaatatgttatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA
                                            ttatctt  CT-rich tract
        ttataagttttctaag  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaaatggtattgcattttgtccaccactagcaaatttatatacttttcacttgttataagttttctaagtcatgatatattaaaatatgttatcttgcagGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - tgcattt
- - - - - - - - - - ccaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtcatga