1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttcttccttttagttctagtttcggttccctgatcaaatatcccagtaagttaaatataatgccagtagcataataggacatcatgtttgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACAGGAAATGCTTCTGAATGTTGCAAGGTGGCTTGGTGAAAGAAAATACGG
species | Glycine max |
transcript | GLYMA12G06820.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTCTCAGCACTCTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACEST: gi|31463583|gb|CD405611.1|CD405611
genomic: GCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACEST: gi|31458829|gb|CD400857.1|CD400857
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACEST: gi|31465176|gb|CD407204.1|CD407204
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACEST: gi|151411582|gb|EV281393.1|EV281393
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGTTGGTCCTTCAATTGTACACEST: gi|209705759|gb|BW661427.1|BW661427
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGCCCTTCAATTGTACACEST: gi|209699902|gb|BW652542.1|BW652542
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGCCCTTCAATTGTACACEST: gi|192319555|gb|FK009537.1|FK009537
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACEST: gi|192319554|gb|FK009536.1|FK009536
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAG ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACEST: gi|26059387|gb|CA802301.1|CA802301
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACAC
EST: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAA ATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTTCA-TTGTACA
genomic: GTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGgtaaacactt ... tgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTT-CAATTGTACA
cagtaagttaaatataatgccagtagcataataggacatcatgtttgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACAGGAAATGCTTCTGAATGTTGCAAGGTGGCTTGGTGAAAGAAAATACGG
agttaaatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcttccttttagttctagtttcggttccctgatcaaatatcccagtaagttaaatataatgccagtagcataataggacatcatgtttgaaatgcagATGTGGATTGCAAAGGCTGAGTATGATGAGGCTGGTCCTTCAATTGTACACAGGAAATGCTTCTGAATGTTGCAAGGTGGCTTGGTGAAAGAAAATACGG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA