1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttatgtttaatggattttccttatctgatgtttgaatgtttgatacttcccaaagttcaaaggcatgaaaatgatgtttcccttccttgtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGATGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAG
species | Glycine max |
transcript | GLYMA12G06580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|193332715|gb|FK301693.1|FK301693
genomic: GGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: GGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|193352408|gb|FK316804.1|FK316804
genomic: GGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: GGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|193409681|gb|FK372019.1|FK372019
genomic: GGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: GGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
genomic: GGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
tacttcccaaagttcaaaggcatgaaaatgatgtttcccttccttgtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGATGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAG
tttcccttccttgtca CT-rich tract
atgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatgtttaatggattttccttatctgatgtttgaatgtttgatacttcccaaagttcaaaggcatgaaaatgatgtttcccttccttgtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGATGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
tgttatg
- - - - - - - - - - - - -tctgatg
- - - - - - - - - - - - - - - - - tgaatgt
- - - - - - - - - - - - - - - - - - - - - - - -cttccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgaa