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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggcaatataaggtggctggtgggtgtggcattagctgatatgtatatgtttgaccctctgtaattttctgaatgtcttatcatttttttttgttctttcaattatgtatccctctttagGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCA

Basic information

species Glycine max
transcript GLYMA12G06430.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 4
gtatgggcaatataaggtggctggtgggtgtggcattagctgatatgtatatgtttgaccctctgtaattttctgaatgtcttatcatttttttttgttctttcaattatgtatccctcttta----gGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCA
                                    | ||   |   |  | |||  |  |    |     | ||| ||  ||    |  ||     |      ||| |  | |  ||  | |    ||| || |||||||||||||  || || |||||  | |||||| | |||||||||||| || | ||||| ||||| |||||||||||||| || |||||||
----------------------------gcccatgcttgcaagttcatcaaagttctaatcctaattgaactgtgactgatttgagttcattggggatggcaataataaaatgtttctaatcatgcagGCAATAGAAGTTGTTGATCCAGACCAAAAGATTAAAATGGTTGAGGAGCTTGATGGTCATATCATGCGATGTGTGCGTGATCAGAATGGAAACCATGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgaatgtcttatcatttttttttgttctttcaattatgtatccctctttagGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCA
                                          tatccctcttt  CT-rich tract
            ttatcatttttttttg  TA-rich tract