1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatttcagcttttaacctgttttgtgcctctttcattgtattttgtcaacttatttggtaccaatggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGA
species | Glycine max |
transcript | GLYMA12G06200.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACCATGATCTTAATGCATATAGAATTTTGTTTGATCAG GAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATEST: gi|6566897|gb|AW234529.1|AW234529
genomic: TACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagc ... tggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
EST: GAATTTTGTTTGATCAG GAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATEST: gi|193525476|gb|FK478013.1|FK478013
genomic: GAATTTTGTTTGATCAGgtatttcagc ... tggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
EST: GAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAG GAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAATAGTAGGGATEST: gi|18730560|gb|BM525946.1|BM525946
genomic: AAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagc ... tggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
EST: AAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAG GAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
genomic: AAAGGGCATTGTACCATGATCTTAATGCATATAGAATTTTGTTTGATCAGgtatttcagc ... tggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGAT
ttttgtgcctctttcattgtattttgtcaacttatttggtaccaatggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGA
tttcattgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcagcttttaacctgttttgtgcctctttcattgtattttgtcaacttatttggtaccaatggtggacagGAAGCCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACTCCTCCAGAGTACTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC