1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgctgctaatgtcttttatttgatttgattttctttacttcaacctgctgatcctcactttttcaatttactatctaatatctatttgtactataagcagGTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACACCTTGTTCAGCTTATCATGTGGCAAGCTCTTAGAAGGAACCCCCGAACA
species | Glycine max |
transcript | GLYMA12G05470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAG GTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACAEST: gi|7691890|gb|AW760008.1|AW760008
genomic: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAGgtcacattaa ... ctataagcagGTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACA
EST: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAG GTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACAEST: gi|18710446|gb|BM522497.1|BM522497
genomic: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAGgtcacattaa ... ctataagcagGTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACA
EST: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAG GTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACA
genomic: GTTCGCAGGCCATGAAGTGCATATATTGGCCACACCTGGTCACACCGAAGgtcacattaa ... ctataagcagGTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACA
tgctgatcctcactttttcaatttactatctaatatctatttgtactataagcagGTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACACCTTGTTCAGCTTATCATGTGGCAAGCTCTTAGAAGGAACCCCCGAACA
tttttcaatttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgctaatgtcttttatttgatttgattttctttacttcaacctgctgatcctcactttttcaatttactatctaatatctatttgtactataagcagGTCATGTAAGCTTCTACTTTCCAGGTTCTGGGGCAATTTTTACTGGAGACACCTTGTTCAGCTTATCATGTGGCAAGCTCTTAGAAGGAACCCCCGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
tgctgct
- - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - ctgctga