1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttacaaattcttgcaattttcatgagcagtcagattcacgaatattgtctgtatatcacaaacagagattctgaccgttctatctcttttattttacttttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTACAGGGCTAATGCTATTCGTGTCCTTTGTCGTATCACGGATGGAA
species | Glycine max |
transcript | GLYMA12G04820.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGAATGGTCTACCTGATCATAAAGGAACTCTCCCCTTCTGCAGATGAG GTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATEST: gi|209720618|gb|BW677326.1|BW677326
genomic: GGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCCCTTCTGCAGATGAGgttacaaatt ... tttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGAT
EST: GGAGAATGGTCTACCTGATCATAAAGGAACTCTCCCCTTCTGCAGATGAG GTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATEST: gi|208174273|gb|GD971678.1|GD971678
genomic: GGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCCCTTCTGCAGATGAGgttacaaatt ... tttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGAT
EST: CTACCTGATCATAAAGGAACTCTCCCCTTCTGCAGATGAG GTTATCATCGTTACAAGCTCTCTCATG-AGGACATGAATAGTAAGACTGATEST: gi|209703331|gb|BW683311.1|BW683311
genomic: CTACCTGATCATAAAGGAGCTCTCCCCTTCTGCAGATGAGgttacaaatt ... tttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGAT
EST: GGAGAATGGTCTACCTGATCATAAAGGAACTCTCCCCTTCTGCAGATGAG GTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATEST: gi|193411617|gb|FK378598.1|FK378598
genomic: GGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCCCTTCTGCAGATGAGgttacaaatt ... tttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGAT
EST: GGAGAATGGTCTACCTGATCATAAAGGAACTCTCCCCTTCTGCAGATGAG GTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATEST: gi|208048871|gb|GD845380.1|GD845380
genomic: GGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCCCTTCTGCAGATGAGgttacaaatt ... tttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGAT
EST: GGAGAATGGTCTACCTGATCATAAAGGAACTCTCCCCTTCTGCAGATGAG GTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGAT
genomic: GGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCCCTTCTGCAGATGAGgttacaaatt ... tttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGAT
tatcacaaacagagattctgaccgttctatctcttttattttacttttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTACAGGGCTAATGCTATTCGTGTCCTTTGTCGTATCACGGATGGAA
ttctgac putative branch site (score: 2)
ccgttctatctctttt CT-rich tract
ttctatctcttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacaaattcttgcaattttcatgagcagtcagattcacgaatattgtctgtatatcacaaacagagattctgaccgttctatctcttttattttacttttttaccagGTTATCATCGTTACAAGCTCTCTCATGAAGGACATGAATAGTAAGACTGATATGTACAGGGCTAATGCTATTCGTGTCCTTTGTCGTATCACGGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA