Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcaacattcgaagaaagcttttgaaaaataagcaattagttaaatgatttatgactgaattagtattgataattgacataaatttttctgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG

Basic information

species Glycine max
transcript GLYMA12G04380.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15662577|gb|BI699956.1|BI699956
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|31470524|gb|CD412552.1|CD412552
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|9983441|gb|BE657549.1|BE657549
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|298168121|gb|HO013384.1|HO013384
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|9902153|gb|BE611121.1|BE611121
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|10237202|gb|BE806090.1|BE806090
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|19937846|gb|BQ081442.1|BQ081442
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|6913531|gb|AW395061.1|AW395061
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|6665823|gb|AW277273.1|AW277273
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|192302463|gb|FG994799.1|FG994799
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|11689029|gb|BF596635.1|BF596635
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|7640359|gb|AW734662.1|AW734662
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|16346057|gb|BI971652.1|BI971652
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|4293239|gb|AI442019.1|AI442019
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|19052898|gb|BM731565.1|BM731565
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|209716143|gb|BW662328.1|BW662328
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|209716144|gb|BW662329.1|BW662329
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|14259389|gb|BG882297.1|BG882297
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|10234688|gb|BE803576.1|BE803576
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCACGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|209701276|gb|BW652698.1|BW652698
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|7924235|gb|AW830261.1|AW830261
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|192302464|gb|FG994800.1|FG994800
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|21887800|gb|BQ741013.1|BQ741013
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|193607440|gb|FK558285.1|FK558285
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|4313645|gb|AI460764.1|AI460764
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|22932170|gb|BU549309.1|BU549309
EST:     GCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: GCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|254347080|gb|GR856750.1|GR856750
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|151410197|gb|EV280012.1|EV280012
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|15287532|gb|BI471423.1|BI471423
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|16280956|gb|BI944235.1|BI944235
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCANACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|298182768|gb|HO031503.1|HO031503
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|18039394|gb|BM307688.1|BM307688
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|31305809|gb|CD391012.1|CD391012
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|19053202|gb|BM731869.1|BM731869
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|31307110|gb|CD392313.1|CD392313
EST:     GGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: GGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|13181199|gb|BG352539.1|BG352539
EST:     ATCCATTGCTGCTAATACTTGGGTTGGCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|5605758|gb|AI899822.1|AI899822
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|27424685|gb|CA936205.1|CA936205
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|14258527|gb|BG881435.1|BG881435
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|17022353|gb|BM093387.1|BM093387
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|31473159|gb|CD415187.1|CD415187
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|7041616|gb|AW471568.1|AW471568
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|10709203|gb|BF008927.1|BF008927
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|209707113|gb|BW653225.1|BW653225
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|10234254|gb|BE803142.1|BE803142
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|192327160|gb|FK015552.1|FK015552
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|26267877|gb|CA818940.1|CA818940
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|16280798|gb|BI944151.1|BI944151
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|193392314|gb|FK360139.1|FK360139
EST:     CTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: CTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|12496222|gb|BG046956.1|BG046956
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|4291776|gb|AI441810.1|AI441810
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|192297743|gb|FG992791.1|FG992791
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|192329810|gb|FK023006.1|FK023006
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|9259018|gb|BE347165.1|BE347165
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCATGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|193610424|gb|FK566212.1|FK566212
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|213620321|gb|DB961466.1|DB961466
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|23732816|gb|BU764581.1|BU764581
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|209707112|gb|BW653224.1|BW653224
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|21994544|gb|BQ786072.1|BQ786072
EST:     GCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: GCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|5058413|gb|AI736945.1|AI736945
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|26268919|gb|CA819982.1|CA819982
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|4288784|gb|AI441382.1|AI441382
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|12774676|gb|BG239603.1|BG239603
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAATGGTTCACCGCAAACAAAAA                         AGTTGCAAGATATACTCCCTAGCATTATCCACCAATT
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATT
EST: gi|8283824|gb|BE021383.1|BE021383
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|37995603|gb|CF807192.1|CF807192
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|120531747|gb|EH259880.1|EH259880
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|298173480|gb|HO016816.1|HO016816
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|7588517|gb|AW704241.1|AW704241
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|6724811|gb|AW309210.1|AW309210
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|31458475|gb|CD400503.1|CD400503
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|19934647|gb|BQ079677.1|BQ079677
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|31561120|gb|CD486958.1|CD486958
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|192334417|gb|FK024110.1|FK024110
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|192331057|gb|FK020277.1|FK020277
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|9563845|gb|BE473354.1|BE473354
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|15288097|gb|BI471988.1|BI471988
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|9566102|gb|BE475540.1|BE475540
EST:     GGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: GGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|207682337|gb|GD667186.1|GD667186
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|8827395|gb|BE211125.1|BE211125
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|208099859|gb|GD900410.1|GD900410
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATC
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATC
EST: gi|13311961|gb|BG405612.1|BG405612
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|192334416|gb|FK024109.1|FK024109
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|58018072|gb|CX704814.1|CX704814
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|31459158|gb|CD401186.1|CD401186
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|213591114|gb|DB979361.1|DB979361
EST:     ATCCATTGCTGCTATTACTTGGGTTGTCAGTGGTTCATCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTA-CCTCTCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCAC-CAATTAG
EST: gi|8826368|gb|BE210098.1|BE210098
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|31468818|gb|CD410846.1|CD410846
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATT-ATCCACCAATTAG
EST: gi|31464970|gb|CD406998.1|CD406998
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|8827315|gb|BE211045.1|BE211045
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|4306905|gb|AI443971.1|AI443971
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|209701277|gb|BW652699.1|BW652699
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|9900155|gb|BE609123.1|BE609123
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|58025035|gb|CX711776.1|CX711776
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|4313997|gb|AI461116.1|AI461116
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGATCACCGCATACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|7693121|gb|AW761218.1|AW761218
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
EST: gi|6913168|gb|AW394698.1|AW394698
EST:     ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGA                         AGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
genomic: ATCCATTGCTGCTAATACTTGGGTTGTCAGTGGTTCACCGCAAACAAAGAgtaagcaact ... tgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatttatgactgaattagtattgataattgacataaatttttctgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG
                           aattgac  putative branch site (score: 3)
                                       tttttctgttttac  putative PPT
              aattagtattgataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtcaacattcgaagaaagcttttgaaaaataagcaattagttaaatgatttatgactgaattagtattgataattgacataaatttttctgttttacagAGTTGCAGGATATACTCCCTAGCATTATCCACCAATTAG

tgtcaac
- - - - - - - - - gcttttg
- - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - atgactg