1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacctgtagtctcttcatttcgtttattaatttgatccccatcggtccttgcactgattaggagtgttccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGT
species | Glycine max |
transcript | GLYMA12G03540.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|27424619|gb|CA936139.1|CA936139
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|213605371|gb|DB966920.1|DB966920
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|151409297|gb|EV279105.1|EV279105
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|19452388|gb|BM953798.1|BM953798
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|9563823|gb|BE473332.1|BE473332
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACEST: gi|213617322|gb|DB965193.1|DB965193
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACAC
EST: GAAAATTTTAGAGCTTTGTGTACAG GGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCAT
genomic: GAAAATTTTAGAGCTTTGTGTACAGgtacctgtag ... ccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCAT
ttattaatttgatccccatcggtccttgcactgattaggagtgttccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGT
aatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctgtagtctcttcatttcgtttattaatttgatccccatcggtccttgcactgattaggagtgttccacgtgtagGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA