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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatttgtttattttggataaaaaatgggtatctatcagttgatatacgaattcacgaggttctgtctgctgacttttggaacaacacctcccccctccagtgcatatgttttttccagtccttttgtgctgatacatttactaactgtgaaccatttctatagGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCACGCAT

Basic information

species Glycine max
transcript GLYMA12G03060.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963692|gb|BM270438.1|BM270438
EST:     AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCT                         GCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
genomic: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
EST: gi|9899237|gb|BE608135.1|BE608135
EST:     AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCT                         GCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
genomic: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
EST: gi|7692015|gb|AW760131.1|AW760131
EST:     AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCT                         GCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA
genomic: AAGCTCTTGCTGCAGCAGGAGCTGAGATCCTTGTTGGCACATGGGTACCTgtaagttatt ... atttctatagGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttccagtccttttgtgctgatacatttactaactgtgaaccatttctatagGCCCTGAATATTTTTGAGTCCAGCCTACGGCGTGGAAAGTTTGACATATCACGCAT
                              tactaac  putative branch site (score: 0)
 ccatttct  putative PPT
 atacattta  TA-rich tract