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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaatcaaaatgtgtacagatacgcgatgttattccaaactgattttgaatatatctatggattacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG

Basic information

species Glycine max
transcript GLYMA12G02110.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310498|gb|FG999199.1|FG999199
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtaataaaat ... ttacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|58017541|gb|CX704283.1|CX704283
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtaataaaat ... ttacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|58024666|gb|CX711407.1|CX711407
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtaataaaat ... ttacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|58017601|gb|CX704343.1|CX704343
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtaataaaat ... ttacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|151403387|gb|EV273197.1|EV273197
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtaataaaat ... ttacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|192330787|gb|FK022358.1|FK022358
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtaataaaat ... ttacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|192310499|gb|FG999200.1|FG999200
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtaataaaat ... ttacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCC
EST: gi|192299220|gb|FG990703.1|FG990703
EST:     TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAG                         ACAGTCATAAAT
genomic: TTGATAGTCTGGACCGCGAAAGGATAGGGAAAGCAAAGCAGGAATTTCAGgtaataaaat ... ttacttgcagACAGTCATAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatacgcgatgttattccaaactgattttgaatatatctatggattacttgcagACAGTCATAAATGATCCGTTTATGCTCCACAGTATCATCTTGGTGTTTGCCAACAAACAGGACCTG
                    aactgat  putative branch site (score: 3)
                         attttgaatatatcta  TA-rich tract