1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aattgaaattcccaatgttactccttttatgaatcttactctgccttttttttcctccacgatgtccattaatgttttccctgttgtcacatgattctagGTGGCCCAAAAGCAGCTTGTGCTGGTTGTGCTGGCTTTGCGGCATTCTCCGTCGTAATTGAGAAGTTTTTGGAGAGACATCAGTAAGGGAATTGATATTA
species | Glycine max |
transcript | GLYMA12G01980.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATACCAGT-GATGCTGGATGTGCAACTGGAGGTGCAATATCAGCAAAAG GTGGCCCAAAAGCCGCTAGTGCTGGTTGTGCTGGGCTT-GCAGCATTCEST: gi|193546511|gb|FK500952.1|FK500952
genomic: AATACC-GTTGTTGCTGGATGTGCAACTGGAGGTGCAATATCAGCAAAAGgtaactcttt ... atgattctagGTGGCCCAAAAGCAGCTTGTGCTGGTTGTGCTGG-CTTTGCGGCATTC
EST: AAATACCGTTGTTGCTGGATGTGCAACTGGAGGTGCAATATCAGCAAAAG GTGGCCCAAAAGCAGCGTGTGCTGGTTGTGCTGGCTTTGCGGCATTCTCEST: gi|8827606|gb|BE211336.1|BE211336
genomic: AAATACCGTTGTTGCTGGATGTGCAACTGGAGGTGCAATATCAGCAAAAGgtaactcttt ... atgattctagGTGGCCCAAAAGCAGCTTGTGCTGGTTGTGCTGGCTTTGCGGCATTCTC
EST: AAATACCGTTGTTGCTGGATGTGCAACTGGAGGTGCAATATCAGCAAAAT GTGGCCCAAAAGCAGCTTGTGCTGGTTGTGCTGGCTTTGCGGCATTCTCCGEST: gi|8827246|gb|BE210976.1|BE210976
genomic: AAATACCGTTGTTGCTGGATGTGCAACTGGAGGTGCAATATCAGCAAAAGgtaactcttt ... atgattctagGTGGCCCAAAAGCAGCTTGTGCTGGTTGTGCTGGCTTTGCGGCATTCTCCG
EST: AATACCGTTGTTGCTGGATGTGCAACTGGAAGTGCAATAATCAGCAAAAG -TGGCCCAAAAGCA
genomic: AATACCGTTGTTGCTGGATGTGCAACTGGAGGTGCAATA-TCAGCAAAAGgtaactcttt ... atgattctagGTGGCCCAAAAGCA
ttttttttcctccacgatgtccattaatgttttccctgttgtcacatgattctagGTGGCCCAAAAGCAGCTTGTGCTGGTTGTGCTGGCTTTGCGGCATTCTCCGTCGTAATTGAGAAGTTTTTGGAGAGACATCAGTAAGGGAATTGATATTA
cattaat putative branch site (score: 3)
attaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgaaattcccaatgttactccttttatgaatcttactctgccttttttttcctccacgatgtccattaatgttttccctgttgtcacatgattctagGTGGCCCAAAAGCAGCTTGTGCTGGTTGTGCTGGCTTTGCGGCATTCTCCGTCGTAATTGAGAAGTTTTTGGAGAGACATCAGTAAGGGAATTGATATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA