1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattcaatatgcctaagtgctgtctcattatatatatatatatatatatatttatataatgattgtttaagttttgttgaatttttgtgtgtagatagttgacgttttgttgctatgttaacttgcttgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGCTCAGCCTTCACATGGAAGGGTCTAACTTCACTCTTGAGCA
species | Glycine max |
transcript | GLYMA12G01690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAG GACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAEST: gi|17023756|gb|BM094790.1|BM094790
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAGgtattcaata ... tgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
EST: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAG GACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAEST: gi|21994774|gb|BQ786302.1|BQ786302
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAGgtattcaata ... tgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
EST: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAG GACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAEST: gi|57574459|gb|CX547434.1|CX547434
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAGgtattcaata ... tgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
EST: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAG GACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAEST: gi|120493216|gb|EH221383.1|EH221383
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAGgtattcaata ... tgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
EST: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAG GACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAEST: gi|120494419|gb|EH222586.1|EH222586
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAGgtattcaata ... tgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
EST: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAG GACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAEST: gi|15000769|gb|BI321583.1|BI321583
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAGgtattcaata ... tgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
EST: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAG GACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAEST: gi|120495732|gb|EH223899.1|EH223899
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAGgtattcaata ... tgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
EST: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAG GACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTCCAATCCCTGTCACTTCAGgtattcaata ... tgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCA
ttttgtgtgtagatagttgacgttttgttgctatgttaacttgcttgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGCTCAGCCTTCACATGGAAGGGTCTAACTTCACTCTTGAGCA
tgttaac putative branch site (score: 2)
cttgctt CT-rich tract
tatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcaatatgcctaagtgctgtctcattatatatatatatatatatatatttatataatgattgtttaagttttgttgaatttttgtgtgtagatagttgacgttttgttgctatgttaacttgcttgctatgtagGACATCAAGTCAGAAGATTGGTCTCGCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGCTCAGCCTTCACATGGAAGGGTCTAACTTCACTCTTGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG