Sequence
atgc intronic sequence ATGC exonic sequencegtgatgctaatttatgttattgtggttattctagccacttattaatgaatccatttgctggacatgatgtatcactaatgtcttgtatttttcttttttgagtatagGCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTG
Basic information
species | Glycine max |
transcript | GLYMA12G01650.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G01650.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g02550.t01 (Vitis vinifera), 3'ss of exon 4
gtgatgcta-atttatgttattgtggttattctagccacttattaatgaatccatttgctggacatgatgtatcactaatgtcttgtatttttcttttttgagtatagGCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTG
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gtaattctgtgattatttcattcttcctctgcctttttctttctttccaacttgg--gtttgatatcgtatttgtggattaattcacatgaacctcttggctttgcagGCATATACTCATTTTTGAAGATATAGGAGGTGAATTTAATATTCCATTGGCTGCCAATGCCAAATCTGTTAGGGAGTTTGATGATGGATTAACTCGAG
upper sequence: GLYMA12G01650.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ27261 (Selaginella moellendorffii), 3'ss of exon 4
gtgatgctaatttatgttattgtggttattctagccacttattaatgaatccatttgctggacatgatgtatcactaatgtcttgtatttttcttttttgagtatagGCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTG
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----------------------------------------------------gtaaagtcacaacgttgagtttccttcgtc--gttgtctgtaattcgcactgcagGCACGCGGCCTTGTTTGAAGAGATCGGTGGTGAATACAACATTCCTCTGGCGGCCAATGCAAAAACCGTGAGACAGTTTGACGAAGGATTAACTCGAG
upper sequence: GLYMA12G01650.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ07373 (Selaginella moellendorffii), 3'ss of exon 4
gtgatgctaatttatgttattgtggttattctagccacttattaatgaatccatttgctggacatgatgtatcactaatgtcttgtatttttcttttttgagtatagGCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTG
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--------------------------------------------gtaaagtcacacg---agcgttgagtttccttcg----tcgttgtctgtaattcgcattgcagGCACGCGGCCTTGTTTGAAGAGATCGGTGGTGAATACAACATTCCTCTGGCTGCCAATGCAAAAACCGTGAGACAGTTTGACGAAGGATTAACTCGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209717157|gb|BW657620.1|BW657620EST: ATTATTTATGACAAGGCCCTTTCAAAGGCTCTTCGCAAGATTTTCAACAA GCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGC
genomic: ATTATTTATGACAAGGCCCTTTCAAAGGCTCTTCGCAAGATTTTCAACAAgtgatgctaa ... ttgagtatagGCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGC
EST:
gi|51341796|gb|CO983113.1|CO983113EST: CAAGATTTTCAACAA GCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGC
genomic: CAAGATTTTCAACAAgtgatgctaa ... ttgagtatagGCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgctggacatgatgtatcactaatgtcttgtatttttcttttttgagtatagGCATGTTTTACTCTTTGAAGATATTGGTGGTGAATATAACATTCCACTGGCAGCCAATGCCAAGTCTGTTAGGGAGTTTGATGATGCACTGACCCGTG
cactaat putative branch site (score: 2)
tgtcttgtatttttct CT-rich tract
tatttttcttttttga TA-rich tract