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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatcctgctcaattgatattcttatttcctgcccatgaccactgtttgagcttccctgatctaattcttctgttgtgtctctgcatggtgctggtgcggcagCTTATGGACAACAAG

Basic information

species Glycine max
transcript GLYMA12G01200.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343854|gb|CO984587.1|CO984587
EST:     AAATATTTATGAGCTTTGTGACGTTGATTTGAAAGATTTCAGCATACAAG                         CTTATGGACAACAAG
genomic: AAATATTTATGAGCTTTGTGACGTTGATTTGAAAGATTTCAGCATACAAGgtatttatcc ... ggtgcggcagCTTATGGACAACAAG
EST: gi|208216244|gb|GE009362.1|GE009362
EST:     AAATATTTATGAGCTTTGTGACGTTGATTTGAAAGATTTCAGCATACAAG                         CTTATGGACAACAAG
genomic: AAATATTTATGAGCTTTGTGACGTTGATTTGAAAGATTTCAGCATACAAGgtatttatcc ... ggtgcggcagCTTATGGACAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcttccctgatctaattcttctgttgtgtctctgcatggtgctggtgcggcagCTTATGGACAACAAG
           atctaat  putative branch site (score: 3)
           atctaatt  TA-rich tract