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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagctatcaactcaatctacaagttcacaagtagcttttataattccaattactggtttcgttaaaattaaaaattcttaagaaaaatgctaatattaaaaaaaatcatattacaaaattaaaaaatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA

Basic information

species Glycine max
transcript GLYMA12G01150.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01150.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0064g00450.t01 (Vitis vinifera), 3'ss of exon 4
gtacagctatcaactcaatctacaagttcacaagtagcttttataattccaattactggtttcgttaaaattaaaaattcttaagaaaaatgctaatattaaaaaaaatcatattacaaaattaaaaaatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
                    |||| | | |   ||   | | | |||  ||   | | | || ||||  |  | | || | |||   |  |  |  | ||             ||   | |||      | |  |||||||||||||| | |||||||||||||| ||||| |||||||||||||| |
-------------------ttacatggt-atgtgtttatatca-aatctcatccattagctt-gttatgaa-atacatgcataaactattttttgtttttgt-----------ttttgacattccc---tttctcagGTGTTGATATGCTAATGAAGGCGGTGGGGAAAGACTGCACATCTTTATTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22929655|gb|BU546794.1|BU546794
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCNNNGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|197661920|gb|FD480288.1|FD480288
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|18732508|gb|BM527083.1|BM527083
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|192299958|gb|FG992156.1|FG992156
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|192317905|gb|FK010211.1|FK010211
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
EST: gi|13479751|gb|BG509094.1|BG509094
EST:     AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAG                         GTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
genomic: AAAAGGCCGTGTTTATAATATATCTCCATACATGAAGTTTCACCCTGGAGgtacagctat ... aatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaaaatgctaatattaaaaaaaatcatattacaaaattaaaaaatctggcagGTGTTGATATGTTGATGAAGGCGGTGGGAAAAGATTGCACATCTTTATTCA
        tgctaat  putative branch site (score: 2)
           taatattaaaaaaaat  TA-rich tract