Sequence
atgc intronic sequence ATGC exonic sequence...gaatgcactttaccaattcctgctgtttatttgatactgattcgtgaaatatgatttatgtcatttatttgttcttatgctaatggaggccactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC
Basic information
species | Glycine max |
transcript | GLYMA12G00830.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G00830.5 (Glycine max), 3'ss of exon 3
lower sequence: AT5G61500.1 (Arabidopsis thaliana), 3'ss of exon 4
-------------gaatgcactttaccaattcctgctgtttatttgatactgattcgtgaaatatgatttatgtcatttatttgttcttatgct-aatggaggccactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC
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atgatttggctgtgtgtgtattttgcctttaaagcatatttccattttcccaatttttg--gttctaccagtagttttaaactttttacatgcttgactcagGCAACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACTCGGACATATGATCTCAGCATAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21887729|gb|BQ740942.1|BQ740942EST: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCT TCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
genomic: TTCCAGATATGGCAGAGTTTGACGATACTTCCAATGTTGAAAATGATCCTgtaagttgat ... cactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaatatgatttatgtcatttatttgttcttatgctaatggaggccactcttcagTCCACATATCTAGTTGCTCATGAACCTGATGACGATAATATTCTTCGAACTCGGACTTACGATATCAGCATCAC
tgctaat putative branch site (score: 2)
ccactcttc putative PPT
atttatgtcatttatt TA-rich tract