1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacaaataccaacatttgtttatggtcaacttccaaatttatatgccattaccaacaatggtttatcttttttgacacttgtgctggacttattcaacttgcagGAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGAGTTAATTCGGAGGATCTATGGGTATTAACTTGTAATGATGATGTTGTTGAT
species | Glycine max |
transcript | GLYMA11G37510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTG GAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGAGTEST: gi|7686039|gb|AW756687.1|AW756687
genomic: GTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTGgtaacaaata ... caacttgcagGAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGAGT
EST: GTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTG GAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGAGT
genomic: GTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTGgtaacaaata ... caacttgcagGAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGAGT
taccaacaatggtttatcttttttgacacttgtgctggacttattcaacttgcagGAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGAGTTAATTCGGAGGATCTATGGGTATTAACTTGTAATGATGATGTTGTTGAT
ttttgac putative branch site (score: 3)
cttattc putative PPT
tttatcttttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaaataccaacatttgtttatggtcaacttccaaatttatatgccattaccaacaatggtttatcttttttgacacttgtgctggacttattcaacttgcagGAACAGAAAGTCAGAGTCTTGTCCTTTTTGCCGTGGTAGCTTGAGGAGAGTTAATTCGGAGGATCTATGGGTATTAACTTGTAATGATGATGTTGTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT