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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctacttctatctctatgctatgctatcacctacttgcaaacacatttctgccactctttctttcattgttttagGACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAG

Basic information

species Glycine max
transcript GLYMA11G36520.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36520.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os04g30880.1 (Oryza sativa), 3'ss of exon 4
---------------------gttctacttct---atctctatgctatgctatcacctacttgcaaacacatttctgccactctttctttcattgttttagGACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAG
                     |||  | || |   ||   |||  | | |  |    |  ||| |   ||         || || |  ||   |  || ||||  | || |  ||||||||||||||  ||||||| |||||||||||||| || ||  | || |||  ||| ||||||  |  |||    |||||||| 
ttggtccctttgcagctcttcgttgaatttttgtaatgaatatattgtacagtatagtgtttg-agctactaaaaatatacactgttatttgatacttcagGAATCTGAAACTATAGAGCAGATTGATAGAGATGTTAAGCGTACTCATCCTGAGATGCAATTTTTCAATGGGGATTCTTCTGATGCCTTGTCTAATCAA

upper sequence: GLYMA11G36520.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G13730.2 (Arabidopsis thaliana), 3'ss of exon 4
----------gttctacttctatctctatgctatgctatcacctac-ttgcaaacacatttc-----tgccactctttctttcattgt-------tttagGACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAG
           ||||  | || | |   |    |  |  |   |   ||||| | | |  |      || |  || |  |||||   |       || ||||||||||  |  | || || || || || ||||| | ||||||||||||||||||  |||| |||||||| |||||     |||||||||||||||||
aaaagatccttttctcttcctgttttagtaaagtaattccgtttttgttgcatataaagctgcaaaatgaccttcctgatttcaacttgatactgttcagGACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAG

upper sequence: GLYMA11G36520.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 3'ss of exon 4
-----------gttctact----tctatctctatgctatgctatcacctac--ttgcaaacacatttctgccactctttctttca--ttg-----ttttagGACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAG
            | ||| |    | ||  |   |  || |  || |  ||   |  |  |     || ||  | | ||| || ||  |||     |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||  ||||||||||||| ||  | |  | ||||||| | ||||||
cccatttctttatgctattggactataaattggtattaggagatgatatatggtcactgatggtgttttga-attatttattacaatttgaacatttttagGACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctatcacctacttgcaaacacatttctgccactctttctttcattgttttagGACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAG
                         tttctgccactctttc  CT-rich tract
                                             attgtttta  TA-rich tract