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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaatcactaacctgtcactttgttgcaattttattttgttctctattttcattacttccttagttcctttattacctattccaatccatgtattttcagGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACAAACTTCGGTCAACAAACCCAGGTCTTACATATG

Basic information

species Glycine max
transcript GLYMA11G33970.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016835|gb|CX703577.1|CX703577
EST:     AGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAG                         GTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACA
genomic: AGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAGgtattttaat ... gtattttcagGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACA
EST: gi|58023232|gb|CX709973.1|CX709973
EST:     AGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAG                         GTTATATTGGTTCAGAGTCTNTTCTAAACACTGTATTGCAAGTTGTCAACA
genomic: AGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAGgtattttaat ... gtattttcagGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcattacttccttagttcctttattacctattccaatccatgtattttcagGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACAAACTTCGGTCAACAAACCCAGGTCTTACATATG
                                              tattttc  CT-rich tract
 atgtatttt  TA-rich tract