1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgaggaagccttttttatattatctaaagtctgcactgtttaacaaattgcaggaaccttctactttatttaattgactgattttttttcctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTAGAGATTGCTTTGGGGCATTATAAGAAATGGA
species | Glycine max |
transcript | GLYMA11G33700.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|192296135|gb|FG989495.1|FG989495
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|193679587|gb|FK622737.1|FK622737
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|7147501|gb|AW509423.1|AW509423
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGCAAAT GGTCCTTTCATCAACCGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|192299879|gb|FG990087.1|FG990087
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|298165886|gb|HO008857.1|HO008857
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACEST: gi|7925097|gb|AW831123.1|AW831123
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCAC
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|10233723|gb|BE802611.1|BE802611
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|12691145|gb|BG157481.1|BG157481
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAAT GGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGAEST: gi|193622016|gb|FK569560.1|FK569560
genomic: AAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATgtatgacatt ... ctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGA
EST: GCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATACAAAGGAAAAT GGTCCTTTCAT
genomic: GCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACAT-CAA-GGAAAATgtatgacatt ... ctctttatagGGTCCTTTCAT
aattgcaggaaccttctactttatttaattgactgattttttttcctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTAGAGATTGCTTTGGGGCATTATAAGAAATGGA
gactgat putative branch site (score: 3)
ctgattttttttcctc CT-rich tract
tactttatttaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaggaagccttttttatattatctaaagtctgcactgtttaacaaattgcaggaaccttctactttatttaattgactgattttttttcctctttatagGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTAGAGATTGCTTTGGGGCATTATAAGAAATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -gcctttt
- - - - - - - - - - - - - - - -tgcactg
- - - - - - - - - - - - - - - - - - - - - - - -ttgcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgactg