Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgcgcaaggagtgtattattatcatttctcattcatacatgtagtatcatattttgtgaaagattcacatagcttgattacataaaatgggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAAGAAGGACTAGAGAAAACAGGGAGATTTTCAATTGTGTCCAAAGACAATG

Basic information

species Glycine max
transcript GLYMA11G33280.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072929|gb|AW102316.1|AW102316
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|120496234|gb|EH224401.1|EH224401
EST:     CTTGGTTTTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|17021946|gb|BM092980.1|BM092980
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|15662614|gb|BI699985.1|BI699985
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|7924037|gb|AW830099.1|AW830099
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAG                         GGATATAGAAACGTGATGGATAACTGCAGAGACAACATGTTGCTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|8283443|gb|BE021004.1|BE021004
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTNTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|13479981|gb|BG509324.1|BG509324
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|308222675|gb|HO760585.1|HO760585
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|16346468|gb|BI972072.1|BI972072
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
EST: gi|14011981|gb|BG726903.1|BG726903
EST:     CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAG                         GGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA
genomic: CTAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGgtaataagat ... gggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcatattttgtgaaagattcacatagcttgattacataaaatgggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAAGAAGGACTAGAGAAAACAGGGAGATTTTCAATTGTGTCCAAAGACAATG
                            gcttgat  putative branch site (score: 5)
                              ttgattacataaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatgcgcaaggagtgtattattatcatttctcattcatacatgtagtatcatattttgtgaaagattcacatagcttgattacataaaatgggattgcagGGATATAGAAACGTGATGGAAAACTGCAGAGACAACATGTTGGTGCTGAAAGAAGGACTAGAGAAAACAGGGAGATTTTCAATTGTGTCCAAAGACAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - -catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcaca