1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagtcttatgggttttctatatgattcactggaaattttatattctgactttctgagtggcaaattttcgcttgttttgctgactcagtgccttttatattgaaaaaatttgtagtttattttcatctgctagctaacctcttgatggtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG
species | Glycine max |
transcript | GLYMA11G31470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATEST: gi|254324498|gb|GR833923.1|GR833923
genomic: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAGgcaagtctta ... gtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
EST: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATEST: gi|193318156|gb|FK286238.1|FK286238
genomic: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAGgcaagtctta ... gtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
EST: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATEST: gi|208259049|gb|GE051982.1|GE051982
genomic: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAGgcaagtctta ... gtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
EST: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATEST: gi|193675358|gb|FK619120.1|FK619120
genomic: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAGgcaagtctta ... gtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
EST: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATEST: gi|15664967|gb|BI702338.1|BI702338
genomic: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAGgcaagtctta ... gtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
EST: GACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATEST: gi|7589710|gb|AW705471.1|AW705471
genomic: GACGTCAAAAGAGGCTTGTATTTCAGgcaagtctta ... gtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
EST: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATEST: gi|21594594|gb|BQ610203.1|BQ610203
genomic: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAGgcaagtctta ... gtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
EST: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
genomic: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAGgcaagtctta ... gtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTAT
aaaaaatttgtagtttattttcatctgctagctaacctcttgatggtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG
atttgtagtttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtcttatgggttttctatatgattcactggaaattttatattctgactttctgagtggcaaattttcgcttgttttgctgactcagtgccttttatattgaaaaaatttgtagtttattttcatctgctagctaacctcttgatggtttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATGTTTCTCGCCCTGACAAAATCAGTGCTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT