1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagtcttatggctattttatatgctttattttcatattttgtcagtattccatgtttattgaacattttgtattctgagtctctaatttcagtttggtttgcagacttacaatggcttttatattgaacattttaaatagtttattttcagctgcttgctaacctattatttgatgttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATGTTTCTCGTCCCGACAAAATCAGTGCTGCTGAG
species | Glycine max |
transcript | GLYMA11G31450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATEST: gi|208259637|gb|GE058029.1|GE058029
genomic: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAGgcaagtctta ... ttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTAT
EST: AAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGATCTGGAGGATTATEST: gi|16284036|gb|BI945871.1|BI945871
genomic: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAGgcaagtctta ... ttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTAT
EST: AGATTGAGTTCCCTTTGCCTGATAGACGTCANAAGAAGCTCGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAAG-AGACCTEST: gi|23729416|gb|BU762793.1|BU762793
genomic: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAGgcaagtctta ... ttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCT
EST: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATEST: gi|48575128|gb|CO036248.1|CO036248
genomic: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAGgcaagtctta ... ttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTAT
EST: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAG GTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATEST: gi|17152954|gb|BM142887.1|BM142887
genomic: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAGgcaagtctta ... ttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTAT
EST: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAC GTTTGCACAGCC
genomic: AGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAGgcaagtctta ... ttttgatcagGTTTGCACAGCC
tttaaatagtttattttcagctgcttgctaacctattatttgatgttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATGTTTCTCGTCCCGACAAAATCAGTGCTGCTGAG
tattatttgatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtcttatggctattttatatgctttattttcatattttgtcagtattccatgtttattgaacattttgtattctgagtctctaatttcagtttggtttgcagacttacaatggcttttatattgaacattttaaatagtttattttcagctgcttgctaacctattatttgatgttttgatcagGTTTGCACAGCCAAGATGAACTTGAGTGATGAGGTAGACCTGGAGGATTATGTTTCTCGTCCCGACAAAATCAGTGCTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT