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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagttttatgccgcattttgtgtgtgatctttcatgaattgttctattttattttttggcatctgtgaattcttttgcaaatgatcaaactattaaattggatttctctttggcagTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAG

Basic information

species Glycine max
transcript GLYMA11G21600.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G21600.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g03330.t01 (Vitis vinifera), 3'ss of exon 5
gtacagttttatgccgcattttgtgtgtgatctttcatgaat-tgttctattttattttttggc--atctgtgaattcttttgcaaatgatcaaactattaaattggatttctctttggcagTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAG
                                     |   |    |||   |||   |  |||  | ||  | || |||||    ||| | |  | | |   ||   |||  ||||| ||||| ||| ||||||||||||||| | ||||||||||||| || |||||||| |||||||||
------------------------------------gtagctgcaatctgccttaaactagggctgaccttagtatgcttttcttgatgctaactccaattt-tttttttttcctttgccagTTAACTGTTGCTGGTATCAAATTTTCTGGAATGTATAGTCCGATGCATTCTAGCAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgaattcttttgcaaatgatcaaactattaaattggatttctctttggcagTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAG
                                         tttctcttt  CT-rich tract
                 aaatgatcaaactatt  TA-rich tract