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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttctctgtaccttgaccgtatgatatttcctgataaaaaatgccataactctcaataaaatttctatgaatattaatagatctttaatcttttcttatgtggtttgtgtggatggctggatgcttgatgtcaatgattgattttacgtgtctaaatgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG

Basic information

species Glycine max
transcript GLYMA11G21490.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G21490.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G092112_T01 (Zea mays), 3'ss of exon 4
gtatgtttttctctgtaccttgaccgtatgatatttcctgataaaaaatgccataactctcaataaaatttctatgaatattaatagatctttaatcttttcttatgtggtttgtgtggatggctggatgcttgatgtcaatgattgattttacgtgtctaaatgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
                                                                ||||| |  |  |  ||    | || ||     ||  ||  ||   ||| |   | | |    ||  || |||  ||  | | || |||    | |   | |  |  |||||||||||||| ||||||| |||||||||||| || |  ||||| |||
---------------------------------------------------------------caaaatattaac-accatctgcatattttg---tttggctcctgctatttataatgcttgaaatatctttcatgcaaa--actaatgttat-cattt---tttaaattagGTATTGGCATGAATTCAACAGTTTTCAGTTTCAGTTGACATCTCACCAG

upper sequence: GLYMA11G21490.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G61710.3 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtttttctctgtaccttgaccgtatgatatttcctgataaaaaatgccataactctcaataaaatttctatgaatattaatagatctttaatcttttcttatgtggtttgtgtggatggctggatgcttgatgtcaatgattgattttacgtgtctaaatgtgta--acagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
                                                                                     || ||| | |   |||| |   |||     |           |||| || | | | |   |||  |    | || |  | | |   | ||||||||||| |||||||| ||||||||||||||||||||| | ||||||
----------------------------------------------------------------------------------gtaagctctctcactgtttccttattggccaacgatacatttataatgcctggttttattttctgacatgttttttcgacttttctggtatagGTATTGGCAAGAGTTCAATAATTTTCAGTTTCAATTAATTGCCCATCAG

upper sequence: GLYMA11G21490.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtttttctctgtacc---------ttgaccgtatgatatttcctgataaaaaatgcca---taactc-tcaataaa---atttctatgaatattaatagatctttaatcttttcttatgtggtttgtgtggatggctggatgcttgatgtcaatgattgattttacgtgtctaaatgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
||||||||||| |  |            || ||   ||   || |  | ||      || ||   ||  |  | || |||    ||| || |||| ||| |  |  |  |    | |||  |    | ||||||  ||    | || |     ||  | ||||  | ||     ||  ||||||| |||||| ||||| |||||||||||||| |||||||| || | ||| ||||||
gtatgtttttccccatgataatatttggttaactaaattccatattttaatggttcctgacaagctattttgttaacaaatctgtttttaagaattttattc-acttggagctctctctctttcactctgtgtgtgtgtgaagttgttca---tcggtaattg--tatagtgagcttcatgtgtatcagGTACTGGCACGAGTTCAACAATTTCCAGTTTCAGTTGACTTCACATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019925|gb|CX706667.1|CX706667
EST:     TGAGGGAACTAGAGTAAAAATCAAGTCGCTTTAACGAA-TGGAGGGAGCG                         GTATGGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTCCTCATCAG
genomic: TGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGA-GGAGCGgtatgttttt ... tgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
EST: gi|208283464|gb|GE088534.1|GE088534
EST:     CTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGAGGAGCG                         GTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
genomic: CTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGAGGAGCGgtatgttttt ... tgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
EST: gi|208175374|gb|GD976769.1|GD976769
EST:     CTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGAGGAGCG                         GTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
genomic: CTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGAGGAGCGgtatgttttt ... tgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
EST: gi|20498067|gb|BQ272997.1|BQ272997
EST:     CTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGAGGAGCG                         GTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
genomic: CTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAACGAATTGGAGGAGCGgtatgttttt ... tgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatggctggatgcttgatgtcaatgattgattttacgtgtctaaatgtgtaacagGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAG
                                      gtctaaa  putative branch site (score: 3)
                     aatgattgatttta  TA-rich tract