1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaattatattcatttaattactttcaactcttcctaaaacatgttgaccttacctaccacaacataaaatgtgacacatatgctacgtggtactacatagtcatatcataggttagtttcataatgatcatttgtttactaagaaatgttgctgttttgggaccttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAAAGACAGAACAACAGTGGAAGATATGGACCTTGCTGTTCGTGCTAGTCT
species | Glycine max |
transcript | GLYMA11G19490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|8283320|gb|BE020881.1|BE020881
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|16346811|gb|BI972406.1|BI972406
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|8284807|gb|BE022366.1|BE022366
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|193422352|gb|FK389741.1|FK389741
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|10847333|gb|BF070038.1|BF070038
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCCGTTTCAACG GGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGEST: gi|10846450|gb|BF071342.1|BF071342
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagG-AACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGG
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|15337505|gb|BI498161.1|BI498161
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAEST: gi|6567149|gb|AW234774.1|AW234774
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
EST: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACG GAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
genomic: AGTAGAGCAAGAAGTTGGATCAGCCACTCATGCTTTCTTCGGTTTCAACGgtaattatat ... cttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGA
tcataatgatcatttgtttactaagaaatgttgctgttttgggaccttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAAAGACAGAACAACAGTGGAAGATATGGACCTTGCTGTTCGTGCTAGTCT
ccttaat putative branch site (score: 4)
atttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattatattcatttaattactttcaactcttcctaaaacatgttgaccttacctaccacaacataaaatgtgacacatatgctacgtggtactacatagtcatatcataggttagtttcataatgatcatttgtttactaagaaatgttgctgttttgggaccttaatgcagGAACTGCTGGTATTTGGAGAATAGCTGCTATCAACGAAGCTGGTGGGTGGAAAGACAGAACAACAGTGGAAGATATGGACCTTGCTGTTCGTGCTAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT