1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttcttgatttcttgtattgtttgttctttttcaaacatcaattcataaaaaggatttttcatttttgaggtgaaagttatgctcaatatttctcaatcttcaattgctttcttggttttattgtgcattatgttaatttttaacatcataagaggtgtgatgctgtgattcagGTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCTGTTCACTTTTGGGTTCGAGAGATGCCAGACACCACAGAAATTATGAAA
species | Glycine max |
transcript | GLYMA11G19100.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTT GTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAG-CTGGATTEST: gi|192303207|gb|FG997783.1|FG997783
genomic: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTgtaagttctt ... tgtgattcagGTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATT
EST: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTT GTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCEST: gi|51335861|gb|CO979727.1|CO979727
genomic: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTgtaagttctt ... tgtgattcagGTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
EST: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTT GTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
genomic: AAGAAGGAACAAAGAAAACTTCGCCATGCATTTTCATACAGCTGGCGGTTgtaagttctt ... tgtgattcagGTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTC
tattgtgcattatgttaatttttaacatcataagaggtgtgatgctgtgattcagGTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCTGTTCACTTTTGGGTTCGAGAGATGCCAGACACCACAGAAATTATGAAA
ttttaac putative branch site (score: 2)
attatgttaattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttgatttcttgtattgtttgttctttttcaaacatcaattcataaaaaggatttttcatttttgaggtgaaagttatgctcaatatttctcaatcttcaattgctttcttggttttattgtgcattatgttaatttttaacatcataagaggtgtgatgctgtgattcagGTGGACATTACCTGAAATTAGGGATTGCCTAGAAGAGGCTGGATTTCGGTCTGTTCACTTTTGGGTTCGAGAGATGCCAGACACCACAGAAATTATGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG