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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgattttattatgcttcagtatttgctataatttttttattactgtttcttaatcccaaactgatatttttttgcagACGGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTAGGTTCTTTCTTGCCG

Basic information

species Glycine max
transcript GLYMA11G18290.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193578515|gb|FK535229.1|FK535229
EST:     GTATATCCTGAGTTGCATTACCAATTTTCAGCTGGAATGCAG                         ACGGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTAGGTT
genomic: GTATATCCTGAGTTGCATTACCAATTTTCAGCTGGAATGCAGgtttgtgatt ... ttttttgcagACGGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTAGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctataatttttttattactgtttcttaatcccaaactgatatttttttgcagACGGTGGCAGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTAGGTTCTTTCTTGCCG
                                    aactgat  putative branch site (score: 3)
                                          tattttttt  CT-rich tract
     ataatttttttattac  TA-rich tract