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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagagtaataactgaaatttttagcttattctcacctctttattctgtcattgtattttttgttatttactggttttttgcctgtctcaattatatttgcagCTATCTCATGGAAGCTCCCTTGGACATTCAGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAGTTG

Basic information

species Glycine max
transcript GLYMA11G15480.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15480.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------gtatgagagtaataactgaaatttttagcttattctcacctctttattctgtcattgtattttttgttatttactggttttttgcctgtctcaattatatttgcagCTATCTCATGGAAGCTCCCTTGGACATTCAGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAGTTG
                            ||    |  |  ||  |   || ||    | |||||  ||  || || | |  ||    ||| | |    |     | ||     |  ||     ||   ||||| |||||||||| ||||| | |||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||
gtatatacttggattctttagcacatgttactgtatcaggaaacgcgtttctttatctgttctcttctagtt-ttatattgttcagatttgtataccatgtcattattgcattttcctttccaattcatgcagATATCTCATGGGAGCTCACATGGACATTCAGGAGTCGCAAATAGAGGAGGTATAAGTGTTGTAGGAAGCCCTGGATATAGTAGTAGCACCAATGGAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727710|gb|BU761888.1|BU761888
EST:     TTTCTAGTGGAAGATTTACATCCAACAATCTCCCAGTTGCATTGTCTCAG                         CTATCTCATGGAAGCTCCCTTGGACATTCAGGAGTCACCAATAGAGGAGGT
genomic: TTTCTAGTGGAAGATTTACATCCAACAATCTCCCAGTTGCATTGTCTCAGgtatgagagt ... atatttgcagCTATCTCATGGAAGCTCCCTTGGACATTCAGGAGTCACCAATAGAGGAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattgtattttttgttatttactggttttttgcctgtctcaattatatttgcagCTATCTCATGGAAGCTCCCTTGGACATTCAGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAGTTG
      tattttttgttattta  TA-rich tract