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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgggctagaacatctgctatagtacagtggacatggtaccatactcataaattcaatctgggatgatattgcaataatatttttttgataccatgtacagGATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGT

Basic information

species Glycine max
transcript GLYMA11G15030.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15030.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g04350.t01 (Vitis vinifera), 3'ss of exon 4
----tgggctagaacatctgctatagtacagtggacatggtaccatactcataaattcaatctgggatgatattgcaataatatttttttgataccatgtacagGATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGT
    |  ||| ||| ||       | | |  |   | |   ||| |      ||     |  || ||     |     ||||||  |||||  |  |  | |||||||||||| |||||||| |||| ||| ||||||||||| || |||
cccttatgctggaagatacttggaattgc--tcaccttctcaccctg--tgaaagggagaaatgagagagcttcattgtaatatcattttgtgattaactgcagGATTGACATCCAAACAAACACAATGCGCTTCCAGTCTCTCTTTCGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964327|gb|BM271064.1|BM271064
EST:     CTTCTCCGGTATTCATCTGCTCTGGTTCAAGGTGCCACAAATGTTTTCTG                         GATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGT
genomic: CTTCTCCGGTATTCATCTGCTCTGGTTCAAGGTGCCACAAATGTTTTCTGgtatgaatac ... ccatgtacagGATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaattcaatctgggatgatattgcaataatatttttttgataccatgtacagGATTGACATTCAAACAAATACAAGGCGATTCCAGTCTCTATTCCGT
                                     ttttgat  putative branch site (score: 4)
                 atgatattgcaataat  TA-rich tract